PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_048190_wgha.t1
Common NameSOVF_048190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 815aa    MW: 90931.1 Da    PI: 6.4101
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_048190_wgha.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Sp_048190_wgha.t1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 215
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  Sp_048190_wgha.t1 216 WNEKNQLLLGIRRA 229
                        8899999****997 PP

2Auxin_resp1187.9e-39254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+v++nPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Sp_048190_wgha.t1 254 AAHAANTNSCFTVFFNPRASPSEFIIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 337
                        79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-48115257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-21127228No hitNo description
PROSITE profilePS5086312.379128230IPR003340B3 DNA binding domain
PfamPF023621.3E-21128229IPR003340B3 DNA binding domain
SMARTSM010196.9E-24128230IPR003340B3 DNA binding domain
PfamPF065075.7E-34254337IPR010525Auxin response factor
PfamPF023097.9E-8706804IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-7712791No hitNo description
PROSITE profilePS5174523.464718802IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MKLSTSGLGQ QGNEGGEKKC LNSELWHACA GPLVCLPTAG SRVVYFPQGH SEQVAATTNR  60
DVDGQIPNYP SLPAQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKD IYLPADFGIP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELVA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAANT NSCFTVFFNP RASPSEFIIP LSKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHA GTSSLSDNID DAANSLMWLR GQGGEQGLNS MNFQSLGMFP  420
WMQTRADNLL PLGNQNQQYQ ALLSSNFQNL RGSDVLNPQM MQFQHPVQYL QQSTGQIPML  480
QQQQQQQQQL FHPSIAQQLL QGQSQVSKDN LPLPQRILPQ EYFKQNEGLA NQQLCGSEAY  540
SLSNNEMQSR QQHHTMSSSL GKADTSTANA ELPSQSPVQN MMSSTRTEGI SSLSDMSNVN  600
HTMLNEQTSQ HPMVSLNSYT PINAFGDAVS LPPYPGKDAS LETGNCSLDV QNHNVFGANL  660
DSSGLVLPMT MPTTYRNSSH DTDLCSIPSG FHNPMYGCNS NSPELHSEGQ GDLQTPTRTF  720
VKVYKSGSVG RSLDISRFSS YHELREELGQ MFGIEGKLDD PLRSGWQLVF VDRENDVLLL  780
GDDPWEAFVY NVSYIKILSP EDVQKLGKHG TETYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641535845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675199.10.0PREDICTED: auxin response factor 8 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A0K9RN020.0A0A0K9RN02_SPIOL; Auxin response factor
STRINGGLYMA11G31940.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8